#!/bin/bash

# enable **/
shopt -s globstar
# 1. Temperature calibration
echo "Temperature calibration:"
# only need input chunk *0001.fits
files="$(ls RAW_data/*/*/*M01*W_0001.fits)"
# check files
printf "${files}"
echo
# commands
#     "python -m hifast.sep file.hdf5 ..." only supports one file
# run "python -m hifast sep -p 3 file1.hdf5 file2.hdf5 file3.hdf5  ..." run multiple files and 3 files in parallel.
python -m hifast sep -p 5 \
    $files \
   -d 4 -m 4 -n 36 \
   --frange 1369  1419  \
   --smooth gaussian --s_sigma 2 \
   --check_cal A --pcal_vary_lim_bin 0.02 \
   --merge_pcals True --method_merge median --method_interp nearest \
   --save_pcals True \
   --outdir 'output2/%(project)s/%(date)s'

# RA-DEC
# # only need beam 01 specs_T.hdf5 file
python -m hifast radec **/*-M01*-specs_T.hdf5